With sequester cuts taking effect and no sign of a deal to end them in sight, FDA stands to lose 5% of its 2013 budget—though coming five months into the Federal fiscal year, it will feel more like 9%—and while the agency has said that it has no plans at present for layoffs, it’s certain the approvals process will slow as the agency absorbs the loss.

FDA said in a statement: “A sequestration of the magnitude contemplated, and this late in the budget year, will have public health consequences for an agency that is already making every dollar count. At this time, FDA does not anticipate having to furlough our employees. Other internal measures to absorb the cuts due to sequester will be taken, including reducing travel and training.”

The agency said that the cuts would cause delays in regulatory policy as well as slow down the decision-making work of FDA Centers, curtail contracts and outside collaborations, impede pandemic preparedness and “affect our user fee programs, under which vaccines and antivirals are approved. We would not be able to undertake program activities that have already been specifically designated and paid for with user fees.”

 Sequestration hits FDA for $209 million
 SEQUESTRATION FY 13 CONTINUING
RESOLUTION
LESS SEQUESTER
AMOUNTS
 NET AMOUNT
Budget Authority
Authorization

$2.521 billion

$126 million

$2.305 billion

User fees (incl.
tobacco, generics)

$1.647 billion

$82 million

$1.565 billion

Totals $4.168 billion $209 million $3.960 billion
 Source: Alliance for a Stronger FDA

The inclusion of user fees—which would make up $82 million of the $209 million sequester hit to the agency, according to Office of Management and budget figures—came as a nasty surprise. About half of that figure is fees to tobacco and generics companies, but PDUFA fees make up the rest, and as PhRMA said in a statement, “the arbitrary sequestration of prescription drug user fees” which by law can be used only to fund drug reviews “does nothing to decrease the nation’s deficit.” According to a recent BioCentury report, the White House is pressuring Congressional leaders to authorize FDA to spend those fees or to alter the sequestration in order to exempt the user fees. For now, the agency is authorized to collect the fees, but not to spend them, and they won’t roll over like phone minutes if the sequester keeps going into 2013.

Those funds could be made available in subsequent years, but doing that would require the authorization of a Congress that is always on the hunt for surplus budget to nip and tuck.

The drain on approvals might not be felt immediately, according to Steven Grossman of Alliance for a Stronger FDA, who notes that the effects of the last cash crunch the agency experienced, in 2007-2008, weren’t felt for two years.

“When you have less people to do the work, they prioritize the reviews closer to approval,” said Grossman. “So in the short term, you might see it, but the time they’re putting into the front end of the queue means that that it’s taking months to get a pre-IND meeting instead of weeks.”

And the cuts would likely impact the agency unevenly, as departments with vacancies go understaffed.

“The fact that existing staff aren’t threatened with furloughs doesn’t mean there’s enough people to do the work,” said Grossman.

Alliance president Diane Dorman recently said in testimony to the FDA’s Science Board: “It is important to recollect that FDA is a staff-intensive organization. More than 80% of its budget is devoted to staff-related costs. Of the remainder, rent and utilities are fixed costs that must be paid first. There is little grant and contracting to cut.”

A fact sheet that was released by the White House in February said: “The FDA’s Center for Drug Evaluation and Research (CDER) would face delays in translating new science and technology into regulatory policy and decision-making, which would almost certainly result in delays in new drug approvals. The FDA would likely also need to reduce operational support for meeting review performance goals, such as the recently negotiated user fee goals on new innovative prescription drugs and medical devices.”

The detail in the White House’s response is indicative of the severity of the situation, Grossman said, noting that the Administration would normally be loathe to indicate where the cuts would fall, lest they paint bullseyes around budget items for the next wave of Congressionally-mandated cuts.

The sequester, conceived as a painful backstop for action on deficit reduction following an earlier budgetary standoff, holds Medicare cuts to 2% and exempts Medicaid altogether. However, a number of other health-related government functions are being walloped. According to OMB figures, the CDC was set to lose $464 million from its non-defense functions, while the NIH was expected to see $2.5 billion in cuts.

“In the event of sequestration, FDA may lack the critical resources needed for the timely review of important medical products that patients depend on to address their health needs,” said consulting firm Avalere Health in a February memo reported by The Hill.

“An underfunded FDA could lead to FDA review clocks being reset or delayed, which would affect a sponsor’s ability to obtain product approval — thus delaying patient access to cutting edge medical innovations.”

At press time, Congressional Republicans were still at loggerheads with their Democratic counterparts and the White House over funding beyond March 27, when a temporary funding bill expires.